CORRELATIONS IN PROTEIN SEQUENCES: A FINGERPRINT OF EVOLUTION?
Grosberg A.
Department of Physics, MIT, Cambridge, MA 02139, USA, E-mail: shura@gels.mit.edu , shura@tanaka.mit.edu
To explore the statistics of protein sequences, we employ the idea of
mapping the sequence onto the trajectory of a random walk. Using three
different mappings, corresponding to three basic physical interactions
between amino-acids, we found pronounced deviations from pure randomness,
and these deviations seem directed towards the minimization of the energy
of the 3D structure. We consider this result as evidence for a physically
driven stage of evolution. We also discuss further findings of non-random
patterns found in proteins in connection with their folding properties,
such as reliable nucleation.