Справочник "Биофизики России"

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• Ширко А. В., Камлюк А. Н., Немцов В. Б. Анализ равновесных конфигураций кольцевой молекулы ДНК // "Математика. Компьютер. Образование". Cб. тезисов 15-ой международной конференции. Под общей редакцией Г.Ю. Ризниченко. 2008
• Эйнгорин М. Я. К моделям грамматик диалектов кодирования генов // "Математика. Компьютер. Образование". Cб. тезисов 15-ой международной конференции. Под общей редакцией Г.Ю. Ризниченко. 2008
• Якушевич Л. В., Краснобаева Л. А. Нелинейная динамика бинарных полинуклеотидных цепочек // "Математика. Компьютер. Образование". Cб. тезисов 15-ой международной конференции. Под общей редакцией Г.Ю. Ризниченко. 2008
• Якушевич Л. В., Краснобаева Л. А. Нелинейная динамика бинарных полинуклеотидных цепочек // "Математика. Компьютер. Образование". Cб. трудов XV международной конференции. Под общей редакцией Г.Ю. Ризниченко. Ижевск: Научно-издательский центр "Регулярная и хаотическая динамика". 2008. Т. 3
  Исследуется динамика нелинейных конформационных возмущений (кинков) в бинарных полинуклеотидных цепочках. Разработан метод, с помощью которого в коэффициенты базового динамического уравнения – уравнения синус-Гордона, вводится линейная зависимость от концентраций оснований. Рассчитаны основные динамические характеристики кинка: его размер, энергия, плотность энергии и скорость распространения, в различных по составу бинарных полинуклеотидных цепочках
• Antal T., Rubin A. In vivo analysis of chlorophyll a fluorescence induction // Photosynth. Res. 2008. V. 96. P. 217-226
• Belyaeva N. E., Schmitt F.-J., Steffen R., Paschenko V. Z., Riznichenko G. Yu., Chemeris Yu. K., Renger G., Rubin A. B. PS II model-based simulations of single turnover flash-induced transients of fluorescence yield monitored within the time domain of 100ns–10s on dark-adapted Chlorella pyrenoidosa cells // Photosynth. Res., 2008, 98 105–119.
• Bulychev A. A., Krupenina N. A. Effects of plasma membrane excitation on spatially distributed H⁺ fluxes, photosynthetic electron transport and non-photochemical quenching in the plant cell In: Bioelectrochemistry Research Developments, Editor: Eias M. Bernstein, Nova Science Publishers, Inc., New York, 2008, pp. 159-188. ISBN: 978-1-60456-360-3.
• Bulychev A. A., Krupenina N. A. Triggered permeation of methyl viologen into in situ chloroplasts upon electrical excitation of a plant cell // Functional Plant Science and Biotechnology 2008, 2, N 1, 63-68 (Print ISSN 1749-0472)
• Cherkashin A. A., Vanag V. K., Epstein I. R. Discontinuously propagating waves in the bathoferroin-catalyzed Belousov-Zhabotinsky reaction incorporated into a microemulsion // Journal of Сhemical Physics 2008, 128, 204508-204514
• Dorodnov A. V., Lebedeva G. V., and Demin O. V. // "Математика. Компьютер. Образование". Cб. тезисов 15-ой международной конференции. Под общей редакцией Г.Ю. Ризниченко. 2008
• Frundzhyan V. G., Parkhomenko I. M., Brovko L. Y., Ugarova N. N. Improved bioluminescent assay of somatic cells counts in raw milk // J. Dairy Research, 2008, vol. 75, N 3, p. 279‑283.
• Khramtsov Y. V. , Rokitskaya T. I. , Rosenkranz A. A. , Trusov G. A. , Gnuchev N. V. , Antonenko Y. N., Sobolev A. S. Modular drug transporters with diphtheria toxin translocation domain form edged holes in lipid membranes // J Contr Release, 2008, 128:241-247
• Kovalenko I. B., Abaturova A. M., Gromov P. A., Ustinin D. M., Riznichenko G. Yu., Grachev E. A., Rubin A. B. Computer Simulation of Plastocyanin–Cytochrome f Complex Formation in the Thylakoid Lumen // Biophysics, 2008, Vol. 53, No. 2, pp. 140–146
  Plastocyanin diffusion in the thylakoid lumen and its binding to cytochrome f (a subunit of the membrane b₆f complex) were studied with a direct multiparticle simulation model that could also take account of their electrostatic interaction. Experimental data were used to estimate the model parameters for plastocyanin–cytochrome f complexing in solution. The model was then employed to assess the dependence of the association rate constant on the dimensions of the lumen. Highest rates were obtained at a lumen span of 8–10 nm; narrowing of the lumen below 7 nm resulted in drastic deceleration of complexing. This corresponded to the experimentally observed effect of hyperosmotic stress on the interaction between plastocyanin and cytochrome f in thylakoids.
• Krupenina N. A., Bulychev A. A. Effect of action potential on photosynthesis and proton transport in the plant cell In: Photosynthesis. Energy from the Sun: 14th International Congress on Photosynthesis, J.F. Allen, E. Gantt, J.H. Golbeck & B. Osmond (eds.), Springer, Dordrecht, 2008, pp. 1299-1302.
  Effects of plasma membrane action potential (AP) on external pH and chlorophyll (Chl) fluorescence in Chara corallina cells were examined in the absence and presence of an electron transport inhibitor and electron acceptors. In intact cells, energy-dependent quenching qE developed at high photon flux densities (PFD) and appeared transiently after electrically stimulated AP at moderate PFD. Diuron (DCMU) fully inhibited qE established by light and AP. The artificial cyclic electron flow restored qE imposed by light but not the electrically induced qE. Methyl viologen (MV) at concentrations 0.1–0.83 mM had no effect on fluorescence and quantum efficiency of photosystem II (PSII) until the first excitatory stimulus was applied. However, triggering AP in the presence of MV induced rapid qE formation at low PFD indicating that a divalent cation MV became instantly accessible to thylakoids and partially diverted electron flow from PSI to MV reduction.
• Krupenina N. A., Bulychev A. A., Rob M., Roelfsema G., Schreiber U. Action potential in Chara cell intensifies spatial patterns of photosynthetic electron flow and non-photochemical quenching in parallel with inhibition of pH banding Photochemical & Photobiological Sciences 2008, 7, 681-688
• Kudryashov Yu.B. Radiation Biophysics (Ionizing Radiations) New York: Nova Science Publishers, Inc., 2008. – 327 p.
• P. V. Fursova, Mil’ko E. S., Levich A. P. Cultivation of Pseudomonas aeruginosa Dissociants under Specified Limitation Conditions // Microbiology, 2008, Vol. 77, No. 2, pp. 192–197
  The possibility of controlling the development of microbial communities was investigated on the basis of experimentally determined requirements for basic nutrients in R, S, and M dissociants of Pseudomonas aeruginosa. On media with the limitation conditions preset on the basis of the predictions of a mathematical model, exhaustion of glucose was experimentally confirmed for all monocultures and mixed cultures, as well as balanced consumption of glucose, nitrogen, and phosphorus by the R dissociant at the corresponding initial medium composition. The experimentally determined composition of mixed cultures was found to conform to the ones calculated using the mathematical model. The data obtained suggest the possibility of cyclic consumption of phosphorus by P. aeruginosa.
• Plusnina T. Yu., Lavrova A. I., Price C. B., Riznichenko G. Yu., Rubin A. B. Nonlinear Dynamics near the cell membrane of Chara corallina // J. Biological Systems, 2008, 16 (2), 197-217.
• Rosenkranz A. A., Vaidyanathan G., Pozzi O. R., Lunin V. G., Zalutsky M. R., Sobolev A. S. Engineered modular recombinant transporters: application of new platform for targeted radiotherapeutic agents to alpha-particle emitting ²¹¹At // Int J Radiat Oncol Biol Phys. 2008, 72(1):193-200
• Sobolev A. S. Modular transporters / In: Encyclopedia of Cancer 2nd edition in 4 volumes. Schwab M, ed. Berlin-Heidelberg-New York-Tokyo, Springer-Verlag, 2008, pp. 1932-1933

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